FastQCFastQC Report
Wed 8 May 2024
EGAF00007960906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484741
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12440.25663189208257603No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8040.16586176948102183No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7470.15410291268945683No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7210.14873922362663772No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG5820.120064116713874No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGAC5660.1167633849829084No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5030.10376675379223131No Hit
ACGCAGCTGTTGCGCCTGAACGGTACCGTGACCGTAAGAGC4990.10294157085948992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)