FastQCFastQC Report
Wed 8 May 2024
EGAF00007960907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484741
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12540.25869484941442955No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11130.22960715103529517No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8840.18236542813584986No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8590.1772080348062161No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7710.15905401028590527No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7120.14688256202796957No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6370.1314103820390683No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCCCA5950.12274596124528356No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5480.11305006178557207No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5220.10768637272275297No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5210.10748007698956762No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5060.10438564099178736No Hit
TTCCCGCGTGGTTCCAACTCTAGCAACGATGGC5030.10376675379223131No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA4980.10273527512630455No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA4910.10129120499400711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)