FastQCFastQC Report
Wed 8 May 2024
EGAF00007960908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467819
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12820.2740376085622858No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8460.18083917070490937No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7040.15048555103576383No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6900.1474929406458481No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG5950.12718594157141971No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGAC5210.111367858081865No Hit
ACGCAGCTGTTGCGCCTGAACGGTACCGTGACCGTAAGAGC5160.1102990686568951No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA4870.10410008999206957No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG4800.1026037847971117No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA4700.10046620594717187No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT4690.1002524480621779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)