FastQCFastQC Report
Wed 8 May 2024
EGAF00007960909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467819
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22520.4813827570064491No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12800.27361009279229787No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11120.2376987681133088No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9020.1928096122645724No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8090.17293012896013202No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7740.16544860298534264No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7180.15347816142567958No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6080.1299647940763415No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCCCA5410.11564301578174466No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5330.1139329527017928No Hit
TTCCCGCGTGGTTCCAACTCTAGCAACGATGGC5200.11115410019687101No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5150.11008531077190109No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4950.10581015307202143No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA4930.10538263730203348No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4810.10281754268210569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)