FastQCFastQC Report
Wed 8 May 2024
EGAF00007960910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485040
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12720.26224641266699655No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8240.16988289625597888No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7250.14947220847765133No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6930.14287481444829292No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6520.13442190334817747No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGAC5560.11462972126010226No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5340.11009401286491836No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5030.1037027873989774No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG4910.101228764637968No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC4900.10102259607455055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)