FastQCFastQC Report
Wed 8 May 2024
EGAF00007960911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485040
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12530.258329209962065No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11500.23709384793006763No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8950.18452086425861783No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7960.1641101764802903No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7950.16390400791687285No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7410.15277090549233052No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6780.13978228599703116No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCCCA5790.1193715982187036No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5410.11153719280884052No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5400.11133102424542304No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5360.11050634999175327No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5150.10617681015998681No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5090.1049397987794821No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5040.10390895596239486No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4940.10184727032822036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)