FastQCFastQC Report
Wed 8 May 2024
EGAF00007960912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472350
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12240.2591298825023817No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8370.17719911082883455No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7440.15751032073674182No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6900.14607812003810733No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG5430.11495712924738014No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5400.11432200698634487No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGAC5390.1141102995659998No Hit
ACGCAGCTGTTGCGCCTGAACGGTACCGTGACCGTAAGAGC5370.11368688472530963No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5160.10924102889806288No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT4950.10479517307081614No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG4920.10416005080978089No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC4790.10140785434529481No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)