FastQCFastQC Report
Wed 8 May 2024
EGAF00007960913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472350
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22890.4845982851698952No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12190.2580713454006563No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11660.24685085212236688No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9050.1915952154123002No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7960.16851910659468614No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7630.16153276172329842No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7480.15835715041812215No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5870.12427225574256377No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT5710.12088493701704243No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5620.1189795702339367No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCCCA5440.1151688366677252No Hit
TTCCCGCGTGGTTCCAACTCTAGCAACGATGGC5380.1138985921456547No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5150.10902932147771781No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT4930.10437175823012597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)