FastQCFastQC Report
Wed 31 May 2023
EGAF00007960914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443086
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9900.2234329227283191No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9660.2180163670258144No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9280.20944015383018194No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9150.2065061861579919No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6720.15166355967013176No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6690.15098649020731866No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6290.14195889736981082No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5420.12232388294823127No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGG5350.1207440542016674No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC5090.1148761188572873No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4790.10810542422915641No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4690.10584852601977945No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG4660.10517145655696636No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAA4520.10201179906383863No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4440.10020628049633705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)