FastQCFastQC Report
Wed 8 May 2024
EGAF00007960915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443086
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT20200.455893438294146No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13690.3089693648637059No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10020.22614120057957146No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9940.22433568201206988No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9670.2182420568467521No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9370.2114713622186212No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6550.14782683271419092No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5500.12412940151573283No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTCTG5240.11826146617135273No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG5160.11645594760385117No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4960.11194215118509725No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA4880.11013663261759568No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGGAT4850.10945956315478259No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA4690.10584852601977945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)