FastQCFastQC Report
Wed 8 May 2024
EGAF00007960916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429388
Total Bases17.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9920.23102648420542723No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9480.2207793417608317No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9370.2182175561496828No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA8840.20587440729596543No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6790.15813203908819062No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6500.15137824065879812No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6320.14718622784055446No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGG5320.12389726773920091No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5230.12180126133007908No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG5150.11993814452197081No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4990.11621191090575424No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC4860.11318434609257828No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4680.10899233327433464No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4370.10177275564291503No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG4310.10037541803683382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)