FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007960917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429388
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22500.524001602280455No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT20110.46834098763821996No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14320.3334979086513829No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9990.232656711412522No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9740.2268344713871836No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9130.21262820572535795No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG8990.20936775131116847No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6530.15207690946183872No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTCTG5330.12413015734021446No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA5250.12226704053210616No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG4910.11434879409764596No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4690.10922522287534818No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA4580.10666343726419927No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)