FastQCFastQC Report
Wed 8 May 2024
EGAF00007960918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443620
Total Bases18.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA10100.22767233217618685No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9740.21955727875208514No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9480.21369640683467833No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9320.21008971642396645No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6900.15553852396194942No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6720.15148099724989855No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6440.14516928903115278No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5650.12736125512826293No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGG5460.12307831026554258No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG5250.11834452910148324No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC5000.11270907533474596No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4900.11045489382805103No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG4850.10932780307470358No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4530.10211442225327982No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4510.10166358595194085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)