FastQCFastQC Report
Wed 8 May 2024
EGAF00007960919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443620
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT20050.4519633920923313No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14730.3320409359361616No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG10280.23172985888823766No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9880.22271313286145802No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9630.21707767909472073No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9240.20828637121861052No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6980.15734186916730536No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTCTG5420.12217663766286463No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA5410.12195121951219512No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5210.11744285649880529No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG5090.1147378386907714No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA5050.11383616608809342No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4920.11090573012939No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGGAT4720.10639736711600019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)