FastQCFastQC Report
Wed 8 May 2024
EGAF00007960920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433476
Total Bases17.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9650.22261901466286482No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9510.21938930875065746No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9490.2189279221917707No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9030.20831603133737506No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6570.1515654845943028No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6260.14441399293155793No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6000.13841596766602995No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGG5570.12849615664996447No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC5330.12295951794332328No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5310.12249813138443649No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG5040.11626941283946517No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG4550.10496544214673939No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4470.10311989591119232No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4470.10311989591119232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)