FastQCFastQC Report
Wed 8 May 2024
EGAF00007960921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433476
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21180.4886083658610857No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT19950.46023309248954963No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14460.3335824820751322No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9420.21731306923566704No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9270.21385267004401629No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9180.2117764305290258No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8810.20324077918962066No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6150.1418763668576807No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTCTG5400.12457437089942697No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA5330.12295951794332328No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG5250.12111397170777621No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4670.10773376150005998No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA4600.1061189085439563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)