FastQCFastQC Report
Wed 8 May 2024
EGAF00007960922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466282
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9340.20030796813945206No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7010.1503382073509164No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6640.14240309512269397No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6610.14175970764473No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6380.13682707031367286No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5550.1190266834233361No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5100.1093758712538764No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5040.10808909629794845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)