FastQCFastQC Report
Wed 8 May 2024
EGAF00007960923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466282
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23930.5132087449226005No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14110.30260657713572475No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12290.26357440347257666No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7730.1657795068220519No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7090.15205390729215368No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7040.15098159482888038No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5540.11881222093068143No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5170.11087710870245904No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4700.10079737154769003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)