FastQCFastQC Report
Wed 8 May 2024
EGAF00007960924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472567
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9440.19976003402692102No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9430.19954842382138407No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG8970.1898143543666824No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8190.17330875833479698No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6390.13521892133813831No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5900.12485002126682565No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5320.11257662934568008No Hit
CACGCGTGGAGTGGCCAGGACTTCCGCACGGGTACCACCAA4970.10517027215188535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)