FastQCFastQC Report
Wed 8 May 2024
EGAF00007960925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472567
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT20420.432108039706539No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12690.26853335082644364No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9950.21055215450930764No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC9490.20081808505460602No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8600.18198477676181365No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7900.1671720623742242No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5670.11998298653947481No Hit
ATCGATCACAAAGGCATCACTTCTGACCAGCTG5350.11321145996229107No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGGGC4780.10114967824668249No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)