FastQCFastQC Report
Wed 8 May 2024
EGAF00007960926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456616
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9610.21046130665592094No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8600.18834206422902394No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG8230.1802389754191706No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7820.17125987700825201No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6010.13162044256005045No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5620.12307934894966448No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4810.10534015452809363No Hit
CACGCGTGGAGTGGCCAGGACTTCCGCACGGGTACCACCAA4580.10030309932196858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)