FastQCFastQC Report
Wed 8 May 2024
EGAF00007960927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456616
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23200.508085568617832No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT19340.42355064211503757No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12600.2759430243355467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9160.20060619864393717No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC8640.18921807383008918No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8040.17607792981411075No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7780.17038386740718678No Hit
ATCGATCACAAAGGCATCACTTCTGACCAGCTG4860.10643516652942515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)