FastQCFastQC Report
Wed 8 May 2024
EGAF00007960928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472574
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9570.20250796700622548No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9320.1972177902296783No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG8280.1752106548392421No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8020.16970887099163307No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6310.13352406184005045No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5890.12463656485545122No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5130.10855442745474782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)