FastQCFastQC Report
Wed 8 May 2024
EGAF00007960929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472574
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT20470.43315967446368187No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13280.28101419037018543No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9630.2037776094325968No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC8670.18346333061065567No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8510.18007761747366552No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7690.1627258376465908No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5500.11638388908403763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)