FastQCFastQC Report
Wed 8 May 2024
EGAF00007960930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461053
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9870.21407517140111876No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9600.20821901169713677No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG8590.18631263650816718No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7490.16245420808453692No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6230.13512546279928772No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5420.1175569836873418No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5040.10931498114099682No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTT4820.10454329545627075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)