FastQCFastQC Report
Wed 8 May 2024
EGAF00007960931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461053
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22650.4912667307229321No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT20500.44463434789492745No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12900.27979429696802754No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9500.20605006365862494No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC8960.194337744250661No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8150.17676926513871508No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7320.1587669964190668No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGGGC4810.10432640065241958No Hit
ATCGATCACAAAGGCATCACTTCTGACCAGCTG4660.10107297859465181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)