FastQCFastQC Report
Wed 8 May 2024
EGAF00007960935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469247
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23230.4950484499634521No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7840.1670761880203816No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7300.15556838935571246No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7050.150240704788736No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6680.14235573162961085No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5660.12061877859634691No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4760.10143911415523169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)