FastQCFastQC Report
Wed 8 May 2024
EGAF00007960937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485289
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8110.16711691383897018No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7860.16196534436181326No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6910.142389380348617No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6390.13167411583613065No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5720.11786790963735011No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5240.10797689624120885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)