FastQCFastQC Report
Wed 8 May 2024
EGAF00007960938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472175
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7690.1628633451580452No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7010.1484619050140308No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4890.1035632975062212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)