FastQCFastQC Report
Wed 8 May 2024
EGAF00007960939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472175
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22060.4671996611425849No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8760.18552443479642083No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7550.159898342775454No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6830.1446497590935564No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6110.1294011754116588No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5260.11139937523164081No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)