FastQCFastQC Report
Wed 8 May 2024
EGAF00007960941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455418
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8730.19169202798308368No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6480.14228686613177344No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5440.11945070243161227No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTTCC5380.11813323144891066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)