FastQCFastQC Report
Wed 8 May 2024
EGAF00007960948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506816
Total Bases20.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14170.27958864755650964No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG10040.19809950751357494No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9940.1961264048490971No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9920.19573178431620156No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8350.16475407248389948No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8130.16041324662204826No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7880.15548048996085365No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG6580.12983015532264175No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5390.10635023361535546No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT5390.10635023361535546No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5080.10023361535547418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)