FastQCFastQC Report
Wed 8 May 2024
EGAF00007960949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506816
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20930.41297038767521155No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14290.2819563707538831No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG10150.20026992044450057No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC9950.1963237151155449No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8640.17047607021088523No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7880.15548048996085365No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7260.14324725344109104No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC6710.13239518878646295No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6550.1292382245232984No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC5880.11601843667129688No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC5770.11384802374037127No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5690.11226954160878898No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5550.10950719787852002No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5210.10279864881929536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)