FastQCFastQC Report
Wed 8 May 2024
EGAF00007960950

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960950
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492772
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13120.2662488940118351No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9530.19339572865341376No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9330.1893370564885992No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG9150.1856842515402661No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8260.1676231604068413No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8210.16660849236563766No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7250.14712686597452776No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG6310.12805110679989934No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT5410.10978708205823383No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5400.1095841484499931No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5280.10714894515110437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)