FastQCFastQC Report
Wed 8 May 2024
EGAF00007960951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492772
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24350.49414333606617256No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20690.41986963545006617No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13090.2656400931871129No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9610.19501919751933958No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC9090.18446664989082173No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8380.17005836370573002No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7390.14996793648989795No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7170.14550339710860194No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC6350.12886284123286226No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6340.12865990762462154No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC5630.11425162143952985No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5400.1095841484499931No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC5360.10877241401703018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)