FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509514
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14010.27496791059715725No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9830.19292894797787696No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG9560.18762978053596172No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9330.18311567493729317No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9080.17820903841700128No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8570.16819949991560584No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7580.14876921929524997No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG6540.12835761137083573No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT6160.12089952385999207No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5630.11049745443697327No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)