FastQCFastQC Report
Wed 8 May 2024
EGAF00007960953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509514
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG22040.43256907562893265No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14140.27751936158770907No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9780.1919476206738186No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC9560.18762978053596172No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9440.18527459500622162No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7640.14994681206012003No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7200.14131113178440632No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC6590.1293389386748941No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC6480.12718001860596567No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6430.1261986913019073No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5970.11717048010457023No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC5630.11049745443697327No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5240.10284310146531793No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5120.10048791593557783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)