FastQCFastQC Report
Wed 8 May 2024
EGAF00007960954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497272
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14030.28213935230618253No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9800.19707524252320663No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG9260.18621599446580545No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9090.18279734229958655No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8340.1677150533309738No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7830.15745909683231712No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7770.1562525137148281No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG6660.13393072604128123No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT5480.11020125806399718No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5130.10316285654531122No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG5120.10296175935906304No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4990.10034749593783683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)