FastQCFastQC Report
Wed 8 May 2024
EGAF00007960955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497272
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24220.4870573850930678No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21130.4249183545423832No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13920.27992728325745264No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9690.19486317347447674No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC9040.1817918563683457No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8130.16349201241976222No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7870.15826348557730982No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC6600.13272414292379223No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6470.130109879502566No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5930.11925063144516482No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC5920.11904953425891664No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC5720.11502759053395326No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5480.11020125806399718No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5280.10617931433903377No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA5190.10436943966280023No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5130.10316285654531122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)