FastQCFastQC Report
Wed 8 May 2024
EGAF00007960956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476220
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9310.19549787913149386No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG6060.12725211036915712No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5740.12053252698332702No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5520.11591281340556886No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTAC4830.10142371172987275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)