FastQCFastQC Report
Wed 8 May 2024
EGAF00007960957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476220
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9200.19318802234261476No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA6430.13502162865902315No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5900.12389231867624206No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5750.12074251396413421No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5520.11591281340556886No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5330.11192306077023224No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5320.11171307378942505No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACCTG5040.10583343832682374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)