FastQCFastQC Report
Wed 8 May 2024
EGAF00007960958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462615
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8910.19260075873026167No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG5560.12018633204716664No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5480.1184570323054808No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5370.11607924516066276No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTAC5290.1143499454189769No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGC4690.10138019735633301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)