FastQCFastQC Report
Wed 8 May 2024
EGAF00007960959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462615
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23760.5136020232806977No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8560.18503507236038605No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6050.1307782929649925No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA6000.12969748062643885No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5550.11997016957945592No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5530.11953784464403445No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACCTG5480.1184570323054808No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5400.11672773256379496No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTATC4750.10267717216259742No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGGGT4700.10159635982404376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)