FastQCFastQC Report
Wed 8 May 2024
EGAF00007960960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477083
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8900.18655034868146633No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG5910.12387781580982765No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5600.1173799946759788No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5520.11570313760917912No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTAC5240.10983413787538018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)