FastQCFastQC Report
Wed 8 May 2024
EGAF00007960961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477083
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8890.18634074154811636No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA6390.13393895821062582No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6100.12786035134347692No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5780.12115292307627813No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5600.1173799946759788No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACCTG5470.11465510194242931No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5350.11213981634222976No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5120.10731885227518063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)