FastQCFastQC Report
Wed 8 May 2024
EGAF00007960962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465288
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8670.18633620467323464No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5850.1257285810078919No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG5490.1179914375612524No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5470.11756159625866129No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTAC4760.10230223001667783No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGC4690.10079778545760903No Hit

[OK]Adapter Content

Adapter graph