FastQCFastQC Report
Wed 8 May 2024
EGAF00007960963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465288
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23080.49603686319011026No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8470.1820377916473238No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6120.1315314385928715No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5990.12873747012602946No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA5770.12400921579752756No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5090.10939461150943072No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACCTG5020.10789016695036191No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4930.10595588108870205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)