FastQCFastQC Report
Wed 8 May 2024
EGAF00007960964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509026
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15730.3090215431038886No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG14690.28859036670032573No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT11120.2184564246227108No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11100.21806351738418076No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10950.21511671309520536No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10680.20981246537504958No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10010.19665007288429273No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9500.18663093830177635No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7540.1481260289258309No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7340.14419695654053036No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6530.1282842133800631No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6410.12592676994888277No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5720.11237147021959586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)