FastQCFastQC Report
Wed 8 May 2024
EGAF00007960965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509026
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG24370.4787574701488726No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT19360.38033420689709363No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16410.3223803892139105No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12190.2394769618840688No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11720.23024364177861248No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10580.2078479291823993No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10490.20607984660901407No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7750.1522515549303965No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7660.15048347235701123No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7520.14773312168730085No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7020.13791044072404945No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6090.11964025413240188No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5960.11708635708195653No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5310.10431687182972972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)