FastQCFastQC Report
Wed 8 May 2024
EGAF00007960966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492269
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG14790.3004454881375833No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14150.28744446633852627No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10890.2212205115495796No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10660.2165482693405435No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10480.2128917319595587No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10250.2082194897505226No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10180.20679750299125071No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9530.19359334022658342No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7240.14707405910183252No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7140.14504264944572987No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6190.1257442577127546No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5520.11213381301686678No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5390.10949298046393334No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT4960.1007579189426919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)